"Circadian sleep/wake cycle, sleep"

pathway activity — cross-omics
GO:0050802Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the "Circadian sleep/wake cycle, sleep" pathway is significantly associated with the RNA expression of multiple genes, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are GPR63, RAPGEF3, and TUBB4A, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECGPR63 →+1.106+0.436<.001.00534
HNSCRAPGEF3 →-0.790-0.497<.001<.00134
GBMTUBB4A →+1.795+0.945<.001<.00134
LUADPLSCR2 →+0.487+0.582.001.00834
UCECNDUFAF4 →+0.481+0.380<.001.00433
UCECELAPOR2 →+1.208+0.477.001.00933
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration