Positive regulation of viral process

Across TCGA patient cohorts, RNA activity of the Positive regulation of viral process pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SGO1, SKA3, and NEIL3, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Positive regulation of viral process activity versus SGO1 in BRCA (Pearson r = 0.41).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	SGO1 →	+0.891	+0.339	<.001	<.001	3	9
GBM	SKA3 →	+0.983	+0.226	<.001	<.001	3	9
OV	NEIL3 →	+0.763	+0.159	.005	.004	3	8
GBM	FBXO5 →	+0.644	+0.164	<.001	<.001	3	8
LSCC	TTK →	+0.949	+0.161	<.001	<.001	3	8
BRCA	AUNIP →	+0.623	+0.207	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0048524 vs SGO1 — BRCA

Explore this scatter interactively →