Amino sugar biosynthetic process

Across TCGA patient cohorts, RNA activity of the Amino sugar biosynthetic process pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are GPX8, SERPINH1, and IKBIP, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Amino sugar biosynthetic process activity versus GPX8 in BRCA (Pearson r = 0.33).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	GPX8 →	+0.580	+0.031	<.001	.001	3	8
BRCA	SERPINH1 →	+0.537	+0.053	<.001	<.001	3	7
BRCA	IKBIP →	+0.540	+0.054	<.001	<.001	3	7
OV	MMP14 →	+0.455	+0.054	<.001	<.001	3	6
LSCC	NRP2 →	+0.438	+0.040	<.001	<.001	3	6
OV	UAP1L1 →	+0.487	+0.074	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0046349 vs GPX8 — BRCA

Explore this scatter interactively →