Alcohol biosynthetic process

Across TCGA patient cohorts, RNA activity of the Alcohol biosynthetic process pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SNRNP200, RRP36_S73, and SETDB1_S1066, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Alcohol biosynthetic process activity versus SNRNP200 in BRCA (Pearson r = -0.32).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	SNRNP200 →	-0.230	-0.023	<.001	<.001	3	6
GBM	RRP36_S73 →	-0.687	-0.043	<.001	<.001	3	6
GBM	SETDB1_S1066 →	-1.111	-0.054	<.001	<.001	3	6
GBM	KPNA2 →	-0.287	-0.022	.002	.001	3	6
COAD	VIRMA →	-0.229	-0.014	<.001	<.001	3	5
GBM	DHX16 →	-0.221	-0.038	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0046165 vs SNRNP200 — BRCA

Explore this scatter interactively →