G-quadruplex DNA unwinding

pathway activity — cross-omics
GO:0044806Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the G-quadruplex DNA unwinding pathway is significantly associated with the protein abundance of multiple proteins, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are RFC3, PHF20_S159, and PRC1_T481, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PDACRFC3 →+0.310+0.082<.001<.001310
LSCCPHF20_S159 →+0.918+0.128<.001<.001310
LUADPRC1_T481 →+1.286+0.107<.001<.001310
UCECPRIM2 →+0.480+0.106<.001<.001310
GBMRFC2 →+0.426+0.096<.001<.00139
GBMRFC4 →+0.439+0.115<.001<.00139
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration