Translocation of molecules into host

pathway activity — cross-omics
GO:0044417Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Translocation of molecules into host pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are RSF1_S397, THOC3, and MSH2, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCARSF1_S397 →+0.821+0.041<.001.00337
LSCCTHOC3 →+0.398+0.083<.001<.00137
LSCCMSH2 →+0.433+0.072<.001<.00137
LSCCMCM2_S41 →+0.623+0.088<.001<.00136
LSCCRFC4 →+0.367+0.067<.001<.00136
LSCCRFC5 →+0.326+0.069<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration