Obsolete canonical Wnt signaling pathway involved in regulation of cell proliferation

pathway activity — cross-omics
GO:0044340Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete canonical Wnt signaling pathway involved in regulation of cell proliferation pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NMT2, FHL1, and NDUFAF4P3, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCANMT2 →+0.391+0.171.007.00135
BRCAFHL1 →+1.010+0.221.005<.00134
OVNDUFAF4P3 →+0.521+0.674.005.00334
BRCATMBIM1 →+0.358+0.128.002.00234
BRCACLEC1A →+0.418+0.167.001<.00134
PDACABCA6 →+0.633+0.218<.001.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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