Regulation of vacuole organization

Across TCGA patient cohorts, RNA activity of the Regulation of vacuole organization pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TARBP2, PRMT1, and MYH6, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of vacuole organization activity versus TARBP2 in LSCC (Pearson r = -0.31).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	TARBP2 →	-0.461	-0.690	<.001	<.001	3	6
BRCA	PRMT1 →	-0.462	-0.177	.006	.005	3	5
OV	MYH6 →	-0.442	-0.507	.004	.003	3	4
BRCA	PCBP2P2 →	-0.802	-0.222	.001	.005	3	4
BRCA	NAT9 →	-0.421	-0.188	.009	.003	3	4
LSCC	BYSL →	-0.811	-0.728	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0044088 vs TARBP2 — LSCC

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