Obsolete histone H4-K16 acetylation

pathway activity — cross-omics
GO:0043984Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete histone H4-K16 acetylation pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SNHG20, TFDP2, and PSMC3IP, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCASNHG20 →+0.512+0.368<.001.00236
HNSCTFDP2 →+1.037+0.282<.001<.00135
LSCCPSMC3IP →+0.538+0.573<.001.00135
LSCCTRAIP →+0.620+0.776<.001.00135
LSCCESPL1 →+0.514+0.385<.001.00235
LSCCPTRH2 →+0.351+0.509.003.00535
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration