Obsolete regulation of DNA-templated transcription in response to stress

pathway activity — cross-omics
GO:0043620Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete regulation of DNA-templated transcription in response to stress pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are COL14A1, OLFML1, and SERBP1, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMCOL14A1 →+1.072+0.075<.001<.00138
BRCAOLFML1 →+0.740+0.040<.001<.00138
BRCASERBP1 →-0.205-0.033<.001<.00138
PDACSEPTIN4 →+0.482+0.037.002.00337
BRCATBCEL →+0.227+0.034<.001<.00137
GBMCOL15A1 →+0.752+0.079<.001<.00137
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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