Obsolete regulation of DNA-templated transcription in response to stress

pathway activity — cross-omics
GO:0043620Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete regulation of DNA-templated transcription in response to stress pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SLC25A1P1, SNPH, and CNR2, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCSLC25A1P1 →+0.226+0.133.005.00633
GBMSNPH →-0.768-0.160<.001<.00133
UCECCNR2 →+0.256+0.129.002.00133
CCRCCMIR4671 →-0.524-0.145<.001.00233
GBMPLP1 →-1.500-0.101<.001.00633
GBMMGAT3 →-0.722-0.127<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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