Obsolete regulation of transcription from RNA polymerase II promoter in response to stress

pathway activity — cross-omics
GO:0043618Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete regulation of transcription from RNA polymerase II promoter in response to stress pathway is significantly associated with the RNA expression of multiple genes, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are RECQL, LINC02373, and MYH2, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADRECQL →+0.288+0.413.004.00433
PDACLINC02373 →+0.331+0.455<.001.00133
HNSCMYH2 →+2.664+0.444<.001.00633
HNSCCAVIN4 →+0.953+0.415.001.00133
HNSCSRL →+1.029+0.359<.001.00433
BRCAAPC →-0.345-0.548.003.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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