Positive regulation of canonical NF-kappaB signal transduction

pathway activity — cross-omics
GO:0043123Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Positive regulation of canonical NF-kappaB signal transduction pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PLS3, MMD, and MS4A6A, each associated with the pathway in up to 2 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVPLS3 →+1.449+0.195<.001<.00132
OVMMD →+1.410+0.237.001<.00132
OVMS4A6A →+1.154+0.171.001.00332
OVCLEC2B →+1.520+0.311.002<.00132
OVDSE →+0.969+0.197.002<.00132
OVADTRP →+2.000+0.250<.001.00232
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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