Regulation of vascular permeability

Across TCGA patient cohorts, RNA activity of the Regulation of vascular permeability pathway is significantly associated with the RNA expression of multiple genes, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PLAT, TIMP3, and CRISPLD2, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of vascular permeability activity versus PLAT in CCRCC (Pearson r = 0.38).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CCRCC	PLAT →	+1.042	+1.050	<.001	<.001	3	6
UCEC	TIMP3 →	+2.089	+1.190	<.001	<.001	3	6
BRCA	CRISPLD2 →	+1.312	+0.680	<.001	<.001	3	6
BRCA	CORO2B →	+1.076	+0.673	<.001	<.001	3	6
BRCA	KIF20A →	-1.030	-0.730	<.001	<.001	3	6
UCEC	RASGRF2 →	+0.925	+0.737	<.001	.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0043114 vs PLAT — CCRCC

Explore this scatter interactively →