Response to hepatocyte growth factor

Across TCGA cell cohorts, RNA activity of the Response to hepatocyte growth factor pathway is significantly associated with the RNA expression of multiple genes, with the LUNG_NSCLC_LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are GCLM, GSR, and ZNF746, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Response to hepatocyte growth factor activity versus GCLM in LUNG_NSCLC_LUAD (Pearson r = 0.56).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUAD	GCLM →	+1.251	+0.892	<.001	<.001	3	7
LUNG_NSCLC_LUAD	GSR →	+1.351	+1.097	.001	<.001	3	6
STOMACH	ZNF746 →	+0.657	+1.246	<.001	.001	3	5
SKIN	PPP1R1C →	-1.562	-1.239	.001	<.001	3	5
LARGE_INTESTINE	PHLDB2 →	-3.843	-1.145	<.001	.002	3	5
LUNG_NSCLC_LUAD	GCLC →	+1.264	+1.115	.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0035728 vs GCLM — LUNG_NSCLC_LUAD

Explore this scatter interactively →