Protein side chain deglutamylation

pathway activity — cross-omics
GO:0035610Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Protein side chain deglutamylation pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are G3BP2, TOP2A_S1213, and BIRC6, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAG3BP2 →+0.193+0.079.002.00136
LSCCTOP2A_S1213 →+0.506+0.093.003<.00136
LSCCBIRC6 →+0.152+0.073.001.00535
LSCCEIF4G1 →+0.302+0.115<.001<.00135
LSCCREPS2_S544 →-0.620-0.111<.001<.00135
BRCARPS3A →+0.284+0.118<.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration