Positive regulation of transmembrane transport

Across TCGA patient cohorts, RNA activity of the Positive regulation of transmembrane transport pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are CYGB, DAB2, and RGN, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Positive regulation of transmembrane transport activity versus CYGB in BRCA (Pearson r = 0.29).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	CYGB →	+0.539	+0.012	.001	.005	3	9
GBM	DAB2 →	+0.389	+0.027	.003	.003	3	8
BRCA	RGN →	+0.818	+0.014	.001	.001	3	7
BRCA	RSU1 →	+0.429	+0.019	<.001	<.001	3	7
HNSC	SORBS1 →	+0.529	+0.024	<.001	<.001	3	7
LSCC	STAB1 →	+0.388	+0.033	<.001	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0034764 vs CYGB — BRCA

Explore this scatter interactively →