Protein maturation by protein folding

pathway activity — cross-omics
GO:0022417Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Protein maturation by protein folding pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are HSP90B1, PITPNB, and MIR3945HG, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVHSP90B1 →-0.501-0.143<.001.00334
GBMPITPNB →-0.425-0.127<.001.00434
GBMMIR3945HG →-0.259-0.123.004<.00134
BRCASFRP1 →-1.734-0.174.003.00233
BRCAGLIPR2 →-0.750-0.155.003.00433
BRCAKLHDC7B →-1.117-0.213.004<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration