Telencephalon regionalization

pathway activity — cross-omics
GO:0021978Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Telencephalon regionalization pathway is significantly associated with the RNA expression of multiple genes, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are WRAP53, ALG3, and CDC25C, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
COADWRAP53 →+0.442+0.584<.001.00735
UCECALG3 →+0.532+0.447.002<.00135
UCECCDC25C →+0.944+0.471<.001.00235
UCECYEATS2 →+0.483+0.521<.001<.00135
UCECTRAIP →+1.107+0.562<.001<.00135
UCECPRC1 →+0.271+0.323.001.00935
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration