Cerebellar Purkinje cell layer formation

Across TCGA patient cohorts, RNA activity of the Cerebellar Purkinje cell layer formation pathway is significantly associated with the RNA expression of multiple genes, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are USP3-AS1, ZNF710-AS1, and FGFBP3, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Cerebellar Purkinje cell layer formation activity versus USP3-AS1 in UCEC (Pearson r = 0.20).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	USP3-AS1 →	+0.461	+0.152	.009	.005	3	3
UCEC	ZNF710-AS1 →	+0.503	+0.156	.002	.009	3	3
OV	FGFBP3 →	+0.551	+0.262	.001	.002	3	3
HNSC	RNF180 →	+0.887	+0.156	<.001	.001	3	3
CCRCC	TMEM117 →	-0.233	-0.187	.002	.001	3	3
CCRCC	RAVER1 →	-0.296	-0.238	.005	.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0021694 vs USP3-AS1 — UCEC

Explore this scatter interactively →