Optic nerve morphogenesis

pathway activity — cross-omics
GO:0021631Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Optic nerve morphogenesis pathway is significantly associated with the protein abundance of multiple proteins, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are EPHB2, SEC23B, and SPN, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECEPHB2 →+0.685+0.782<.001<.00136
LSCCSEC23B →-0.203-0.061.004.00534
LSCCSPN →-0.375-0.057.002.00734
LSCCADA2 →-0.436-0.059<.001.00434
LSCCGLI3_S445 →+1.079+0.146<.001<.00134
GBMGRB2 →-0.240-0.093.003.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration