Optic nerve morphogenesis

pathway activity — cross-omics
GO:0021631Cross-omicsPROTEIN-MS → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Optic nerve morphogenesis pathway is significantly associated with the protein abundance of multiple proteins, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are EPHB2, GLI3_S980, and THRAP3_S535, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCEPHB2 →+0.747+0.705<.001<.00137
BRCAGLI3_S980 →+1.326+0.818<.001<.00134
LSCCTHRAP3_S535 →+1.309+0.587<.001.00333
BRCAZNF703 →+0.762+0.639<.001<.00133
OVPHRF1_S1202 →-0.584-0.374.001.00133
COADNUP153_S687 →-1.092-1.531<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration