Spinal cord association neuron differentiation

pathway activity — cross-omics
GO:0021527Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Spinal cord association neuron differentiation pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are GADD45B, MAP3K8, and ZFP36, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMGADD45B →-0.770-0.349.004.00633
GBMMAP3K8 →-0.795-0.278.003.00932
GBMZFP36 →-0.878-0.322.001.00532
GBMTMEM190 →+0.225+0.265<.001.00432
GBMDSTNP1 →+0.340+0.333.001.00723
LSCCRN7SL391P →-0.406-0.084.002.00732
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration