Obsolete histone ubiquitination

pathway activity — cross-omics
GO:0016574Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete histone ubiquitination pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are KPNA2, TBC1D22A-AS1, and KIF18A, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAKPNA2 →+0.646+0.200<.001<.00135
LUADTBC1D22A-AS1 →+0.266+0.095.008.00534
BRCAKIF18A →+0.572+0.139<.001<.00134
CCRCCLMO2 →-0.460-0.199.002.00934
CCRCCCLEC14A →-0.890-0.183<.001.00134
GBMSCN2B →-0.851-0.167.005.00334
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration