Regulation of skeletal muscle adaptation

Across TCGA patient cohorts, RNA activity of the Regulation of skeletal muscle adaptation pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are YIPF7, OTX2-AS1, and PDE1A, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of skeletal muscle adaptation activity versus YIPF7 in HNSC (Pearson r = 0.32).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	YIPF7 →	+0.531	+1.041	<.001	<.001	3	3
CCRCC	OTX2-AS1 →	+0.110	+0.128	.008	<.001	3	3
GBM	PDE1A →	+0.921	+0.263	.001	<.001	3	3
HNSC	BIN1 →	+0.791	+1.006	<.001	<.001	3	3
HNSC	MLIP →	+0.939	+1.700	<.001	<.001	3	3
HNSC	TSPAN7 →	+0.846	+0.827	.002	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0014733 vs YIPF7 — HNSC

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