Skeletal muscle satellite cell activation

Across TCGA patient cohorts, RNA activity of the Skeletal muscle satellite cell activation pathway is significantly associated with the RNA expression of multiple genes, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are ZNF564, ACIN1, and KAT5, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Skeletal muscle satellite cell activation activity versus ZNF564 in CCRCC (Pearson r = 0.06).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CCRCC	ZNF564 →	+0.367	+0.743	.001	.003	3	4
LSCC	ACIN1 →	+0.361	+0.648	<.001	<.001	3	3
PDAC	KAT5 →	+0.155	+0.653	.002	.001	3	3
LSCC	COL7A1 →	+1.406	+0.674	<.001	<.001	3	3
LSCC	PTPRB →	-0.585	-0.508	<.001	<.001	3	3
LSCC	NGDN →	+0.378	+0.611	.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0014719 vs ZNF564 — CCRCC

Explore this scatter interactively →