Neural crest cell fate commitment

Across TCGA patient cohorts, RNA activity of the Neural crest cell fate commitment pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SFRP1, NID1, and BCHE, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Neural crest cell fate commitment activity versus SFRP1 in BRCA (Pearson r = 0.36).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	SFRP1 →	+0.879	+0.116	<.001	<.001	3	7
UCEC	NID1 →	+0.553	+0.119	<.001	.004	3	7
PDAC	BCHE →	+0.429	+0.109	.008	.001	3	7
UCEC	SVIL →	+0.740	+0.154	<.001	<.001	3	6
UCEC	CDC42EP1 →	+0.349	+0.133	<.001	<.001	3	6
OV	DST →	+0.607	+0.091	<.001	.003	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0014034 vs SFRP1 — BRCA

Explore this scatter interactively →