Negative regulation of transcription by competitive promoter binding

pathway activity — cross-omics
GO:0010944Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Negative regulation of transcription by competitive promoter binding pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are PALM, GART, and RPS2, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAPALM →+0.522+0.049.004<.00137
BRCAGART →-0.184-0.029.002.00636
BRCARPS2 →-0.228-0.072<.001<.00135
BRCATOMM70 →-0.296-0.048.001.00235
GBMUSP10 →-0.271-0.112<.001<.00135
CCRCCVCAN_S2116 →+0.802+0.045<.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration