Regulation of cGMP-mediated signaling

pathway activity — cross-omics
GO:0010752Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of cGMP-mediated signaling pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TUBB4A, HPCAL4, and EEF1AKMT3, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMTUBB4A →+1.627+0.664<.001.00132
GBMHPCAL4 →+1.180+0.545<.001.00832
GBMEEF1AKMT3 →-0.993-0.765.002.00132
GBMATP8A1 →+0.840+0.606.005.00532
GBMRAB11FIP4 →+1.137+0.829<.001<.00132
GBMPLCB3 →-0.326-0.812.003<.00132
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration