Detection of biotic stimulus

Across TCGA patient cohorts, RNA activity of the Detection of biotic stimulus pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are RCSD1, RIN3, and RSU1, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Detection of biotic stimulus activity versus RCSD1 in GBM (Pearson r = 0.71).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	RCSD1 →	+0.594	+0.119	<.001	<.001	3	9
GBM	RIN3 →	+0.412	+0.107	<.001	<.001	3	9
COAD	RSU1 →	+0.455	+0.036	.001	<.001	3	9
OV	STK10 →	+0.388	+0.044	<.001	<.001	3	9
GBM	TBC1D2B →	+0.414	+0.115	<.001	<.001	3	9
GBM	WAS →	+0.691	+0.134	<.001	<.001	3	9

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0009595 vs RCSD1 — GBM

Explore this scatter interactively →