Negative regulation of DNA replication

Across TCGA patient cohorts, RNA activity of the Negative regulation of DNA replication pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are RFC2, RRM2, and SMC2, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of DNA replication activity versus RFC2 in GBM (Pearson r = 0.48).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	RFC2 →	+0.419	+0.077	.001	<.001	3	9
UCEC	RRM2 →	+0.922	+0.096	<.001	<.001	3	9
UCEC	SMC2 →	+0.848	+0.105	<.001	<.001	3	9
LUAD	SMC4 →	+0.560	+0.096	<.001	<.001	3	9
BRCA	TACC3_S71 →	+1.077	+0.047	<.001	.001	3	9
BRCA	TFDP1_S23 →	+0.862	+0.051	<.001	<.001	3	9

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0008156 vs RFC2 — GBM

Explore this scatter interactively →