Transforming growth factor beta receptor signaling pathway

Across TCGA patient cohorts, RNA activity of the Transforming growth factor beta receptor signaling pathway pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are AFG1L, HERC2P7, and DRD2, each associated with the pathway in up to 2 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Transforming growth factor beta receptor signaling pathway activity versus AFG1L in OV (Pearson r = -0.05).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	AFG1L →	-0.765	-0.304	.007	.004	3	2
OV	HERC2P7 →	+0.471	+0.250	.003	.002	3	2
COAD	DRD2 →	+0.967	+0.269	.008	.002	3	2
OV	PLS3 →	-1.095	-0.344	.009	.003	3	1
OV	FUCA2 →	-0.807	-0.235	.006	.004	3	1
OV	THEG →	+0.135	+0.309	.005	<.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0007179 vs AFG1L — OV

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