Activation of transmembrane receptor protein tyrosine kinase activity

pathway activity — cross-omics
GO:0007171Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Activation of transmembrane receptor protein tyrosine kinase activity pathway is significantly associated with the RNA expression of multiple genes, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TPTE2P2, ADGRF1, and ADAM9, each associated with the pathway in up to 2 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADTPTE2P2 →-0.053-0.222.002.00132
HNSCADGRF1 →+1.214+0.282.008.00132
HNSCADAM9 →+0.656+0.380.008.00932
LSCCLRFN1 →-0.378-0.131.007.00332
LSCCZNF607 →-0.604-0.159.002.00232
LUADSEC24A →-0.622-0.295.003.00131
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration