Protein processing involved in protein targeting to mitochondrion

pathway activity — cross-omics
GO:0006627Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Protein processing involved in protein targeting to mitochondrion pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SMC3, ST3GAL6, and FANCL, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCSMC3 →-0.416-0.380<.001<.00136
GBMST3GAL6 →-0.544-0.100.001.00235
LSCCFANCL →-0.544-0.506<.001<.00134
PDACKIDINS220 →-0.237-0.148.008.00134
PDACPRPS1 →-0.221-0.151.002.00234
LSCCRSRC1 →-0.736-0.584<.001<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration