Cellular modified amino acid metabolic process

Across TCGA cell cohorts, RNA activity of the Cellular modified amino acid metabolic process pathway is significantly associated with the RNA expression of multiple genes, with the SKIN cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CNBP, ANO8, and TEF, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, CNBP grouped by Cellular modified amino acid metabolic process-low versus -high activity in SKIN.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKIN	CNBP →	+0.382	+0.821	.004	.002	3	4
SKIN	ANO8 →	-0.669	-0.791	<.001	.003	3	4
BONE	TEF →	-0.931	-1.383	.009	.001	3	3
BLOOD_Leukemia	PCNX1 →	-1.377	-1.144	<.001	<.001	3	3
BLOOD_Leukemia	NAT9 →	+0.402	+0.838	.006	.001	3	3
BLOOD_Leukemia	FBH1 →	+0.732	+1.045	.004	.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

CNBP by Cellular modified amino acid metabolic process activity — SKIN

Explore this box plot interactively →