Planar cell polarity pathway involved in axis elongation

pathway activity — cross-omics
GO:0003402Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Planar cell polarity pathway involved in axis elongation pathway is significantly associated with the RNA expression of multiple genes, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are THSD7B, CLDN11, and ATP8A2, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADTHSD7B →+0.620+0.186.009.00737
COADCLDN11 →+0.721+1.270<.001<.00136
GBMATP8A2 →+1.064+0.211<.001<.00136
LSCCSFRP1 →+1.905+0.889<.001<.00135
COADGRK3 →+0.660+0.961<.001<.00135
COADCHRDL1 →+1.119+0.633.002.00335
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration