"CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation"

pathway activity — cross-omics
GO:0002361Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the "CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation" pathway is significantly associated with the RNA expression of multiple genes, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CD80, SLC15A3, and LILRB2, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
CCRCCCD80 →+0.853+0.177<.001<.00136
HNSCSLC15A3 →+1.016+0.185<.001<.00135
HNSCLILRB2 →+0.622+0.150.002<.00135
HNSCPARVG →+0.691+0.234<.001<.00135
CCRCCCCR5 →+1.071+0.185<.001<.00135
HNSCC5orf58 →+0.641+0.185.002<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration