VSNL1

Across TCGA patient cohorts, VSNL1 mutation is significantly associated with the RNA expression of many other genes, with 1,437 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible VSNL1-associated genes across cancer lineages are RN7SL680P, MTUS2-AS1, and PLD6. Each is linked with VSNL1 in more than 1 cancer types. Because this analysis shows association rather than direction, both VSNL1-to-partner and partner-to-VSNL1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RN7SL680P grouped by VSNL1-low versus VSNL1-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (VSNL1→partner) and Y-score (partner→VSNL1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	RN7SL680P →	+0.227	+5.634	<.001	.001	3	2
UCEC	MTUS2-AS1 →	+0.198	+3.610	.009	.003	3	1
UCEC	PLD6 →	+0.486	+2.732	.009	.003	3	1
UCEC	PCBP1-AS1 →	+0.463	+2.786	<.001	.002	3	1
UCEC	SOCS4 →	+0.520	+3.353	.007	.005	3	1
UCEC	TMEM150B →	+0.853	+2.592	<.001	.006	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,437 associations by consensus.

RN7SL680P by VSNL1 expression — SKCM

Explore this box plot interactively →