VPS41

Across TCGA patient cohorts, VPS41 RNA expression is significantly associated with the RNA expression of many other genes, with 19,870 significant associations in total. THYM shows the largest number of these associations.

The most reproducible VPS41-associated genes across cancer lineages are TCF20, AVL9, and SP4. Each is linked with VPS41 in more than 32 cancer types. Because this analysis shows association rather than direction, both VPS41-to-partner and partner-to-VPS41 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, VPS41 versus TCF20 in ACC, with a Pearson correlation of 0.57.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (VPS41→partner) and Y-score (partner→VPS41) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ACC	TCF20 →	+1.281	+1.390	<.001	<.001	3	33
UVM	AVL9 →	+1.125	+1.356	<.001	<.001	3	33
UVM	SP4 →	+1.137	+1.327	<.001	<.001	3	33
KIRP	USP42 →	+1.025	+1.013	<.001	<.001	3	33
ACC	KPNB1 →	+1.487	+1.294	<.001	<.001	3	33
UVM	INTS2 →	+1.256	+1.324	<.001	<.001	3	33

Each partner links to its Q-omics profile. Showing the 6 strongest of 19,870 associations by consensus.

VPS41 vs TCF20 — ACC

Explore this scatter interactively →