VMP1

Across TCGA patient cohorts, VMP1 protein abundance is significantly associated with the RNA expression of many other genes, with 7,853 significant associations in total. CCRCC shows the largest number of these associations.

The most reproducible VMP1-associated genes across cancer lineages are TACO1, FRMD3, and SCN4B. Each is linked with VMP1 in more than 4 cancer types. Because this analysis shows association rather than direction, both VMP1-to-partner and partner-to-VMP1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, VMP1 versus TACO1 in LSCC, with a Pearson correlation of 0.31.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (VMP1→partner) and Y-score (partner→VMP1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	TACO1 →	+0.396	+0.205	.002	<.001	3	5
BRCA	FRMD3 →	-0.744	-0.517	<.001	.001	3	5
CCRCC	SCN4B →	-1.345	-0.293	<.001	<.001	3	4
CCRCC	MYOM1 →	-0.807	-0.291	<.001	<.001	3	4
BRCA	CRYAB →	-1.325	-0.563	.004	.006	3	4
COAD	ATP5PD →	+0.440	+0.231	.001	.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,853 associations by consensus.

VMP1 vs TACO1 — LSCC

Explore this scatter interactively →