TRIM56

Across TCGA cell cohorts, TRIM56 RNA expression is significantly associated with the go_rna of many other GO terms, with 4,987 significant associations in total. CNS shows the largest number of these associations.

The most reproducible TRIM56-associated GO terms across cancer lineages are Pre-mRNA catabolic process, Cilium movement involved in cell motility, and Positive regulation of response to cytokine stimulus. Each is linked with TRIM56 in more than 16 cancer types. Because this analysis shows association rather than direction, both TRIM56-to-partner and partner-to-TRIM56 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Pre-mRNA catabolic process grouped by TRIM56-low versus TRIM56-high in BONE.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (TRIM56→partner) and Y-score (partner→TRIM56) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BONE	Pre-mRNA catabolic process →	+0.156	+0.849	.002	<.001	3	17
OESOPHAGUS	Cilium movement involved in cell motility →	-0.092	-1.375	.002	<.001	3	16
UPPER_AERODIGESTIVE_TRACT	Positive regulation of response to cytokine stimulus →	+0.131	+1.251	.006	.001	3	16
OESOPHAGUS	Cilium or flagellum-dependent cell motility →	-0.094	-1.445	.001	<.001	3	15
UPPER_AERODIGESTIVE_TRACT	Endosomal transport →	+0.051	+1.111	.001	<.001	3	15
OESOPHAGUS	Regulation of cytokine-mediated signaling pathway →	+0.073	+1.294	<.001	.001	2	16

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,987 associations by consensus.

Pre-mRNA catabolic process by TRIM56 expression — BONE

Explore this box plot interactively →