Across TCGA patient cohorts, TRIM39 protein abundance is significantly associated with the RNA expression of many other genes, with 242 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible TRIM39-associated genes across cancer lineages are PTBP2, LPIN1, and SLCO5A1. Each is linked with TRIM39 in more than 1 cancer types. Because this analysis shows association rather than direction, both TRIM39-to-partner and partner-to-TRIM39 results are reported.

Each partner links to its own Q-omics profile.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (TRIM39→partner) and Y-score (partner→TRIM39) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	PTBP2 →	-0.925	-0.225	.008	.008	2	1
LSCC	LPIN1 →	-1.905	-0.225	.004	.008	2	1
LSCC	SLCO5A1 →	-2.205	-0.225	.006	.008	2	1
LSCC	POU2F3 →	-5.180	-0.225	.003	.008	2	1
LSCC	ZNF280D →	-0.815	-0.225	.006	.008	2	1
LSCC	TBX19 →	-1.479	-0.225	.003	.008	2	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 242 associations by consensus.

Exploration

TRIM39 survival (RNA) · tumor vs normal (RNA) · all TRIM39 data types