TM9SF4

Across TCGA patient cohorts, TM9SF4 mutation is significantly associated with the RNA expression of many other genes, with 1,380 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible TM9SF4-associated genes across cancer lineages are LINC02641, RN7SL237P, and OR8X1P. Each is linked with TM9SF4 in more than 2 cancer types. Because this analysis shows association rather than direction, both TM9SF4-to-partner and partner-to-TM9SF4 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LINC02641 grouped by TM9SF4-low versus TM9SF4-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (TM9SF4→partner) and Y-score (partner→TM9SF4) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	LINC02641 →	+0.170	+2.381	.001	.003	3	3
CESC	RN7SL237P →	+0.244	+5.418	<.001	.005	3	3
SKCM	OR8X1P →	+0.041	+3.080	<.001	.006	3	2
BLCA	RNA5SP199 →	+0.200	+3.043	.002	.003	3	2
BLCA	RNA5SP516 →	+0.129	+4.040	<.001	.007	3	2
SKCM	LINC01817 →	+0.041	+3.469	<.001	.003	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,380 associations by consensus.

LINC02641 by TM9SF4 expression — SKCM

Explore this box plot interactively →