SVOP

Across TCGA patient cohorts, SVOP protein abundance is significantly associated with the RNA expression of many other genes, with 4,169 significant associations in total. GBM shows the largest number of these associations.

The most reproducible SVOP-associated genes across cancer lineages are SNRPD3, PRODH, and GRK3. Each is linked with SVOP in more than 1 cancer types. Because this analysis shows association rather than direction, both SVOP-to-partner and partner-to-SVOP results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SVOP versus SNRPD3 in GBM, with a Pearson correlation of 0.32.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SVOP→partner) and Y-score (partner→SVOP) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	SNRPD3 →	+0.408	+0.492	.004	.007	3	1
GBM	PRODH →	+0.745	+0.521	<.001	<.001	3	1
GBM	GRK3 →	+0.491	+0.436	.001	.002	3	1
GBM	SEZ6L →	+1.065	+0.365	.005	.001	3	1
GBM	SOX10 →	+1.320	+0.582	<.001	<.001	3	1
GBM	SLC16A8 →	+0.687	+0.532	<.001	<.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,169 associations by consensus.

SVOP vs SNRPD3 — GBM

Explore this scatter interactively →