STOML3

Across TCGA cell cohorts, STOML3 mutation is significantly associated with the RNA expression of many other genes, with 6 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible STOML3-associated genes across cancer lineages are MS4A4A, MSGN1, and TAFA1. Each is linked with STOML3 in more than 1 cancer types. Because this analysis shows association rather than direction, both STOML3-to-partner and partner-to-STOML3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, MS4A4A grouped by STOML3-low versus STOML3-high in LARGE_INTESTINE.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (STOML3→partner) and Y-score (partner→STOML3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LARGE_INTESTINE	MS4A4A →	+0.219	+3.678	<.001	.009	3	1
LARGE_INTESTINE	MSGN1 →	+0.100	+3.930	<.001	.003	3	1
LARGE_INTESTINE	TAFA1 →	+0.329	+4.688	<.001	<.001	3	1
LARGE_INTESTINE	C14orf180 →	+0.213	+4.155	<.001	.003	3	1
LARGE_INTESTINE	SPINK9 →	+0.329	+3.793	<.001	.007	3	1
LARGE_INTESTINE	SPRR2F →	+0.629	+3.707	<.001	.009	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 6 associations by consensus.

MS4A4A by STOML3 expression — LARGE_INTESTINE

Explore this box plot interactively →