SPIC

mutation — cross-omics
Cross-omicsMUTATION → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, SPIC mutation is significantly associated with the RNA expression of many other genes, with 1 significant associations in total. LUNG_NSCLC_LUAD shows the largest number of these associations.

The most reproducible SPIC-associated genes across cancer lineages are DCX. Each is linked with SPIC in more than 1 cancer types. Because this analysis shows association rather than direction, both SPIC-to-partner and partner-to-SPIC results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, DCX grouped by SPIC-low versus SPIC-high in LUNG_NSCLC_LUAD.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SPIC→partner) and Y-score (partner→SPIC) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUNG_NSCLC_LUADDCX →+0.140+4.139<.001.00721
Each partner links to its Q-omics profile. Showing the 1 strongest of 1 associations by consensus.

DCX by SPIC expression — LUNG_NSCLC_LUAD

Box plot of DCX in SPIC-low vs SPIC-high samples in LUNG_NSCLC_LUAD.

Explore this box plot interactively →

Exploration