SPDYE1

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, SPDYE1 mutation is significantly associated with the RNA expression of many other genes, with 812 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible SPDYE1-associated genes across cancer lineages are ALDOA, PKN3, and MFSD12. Each is linked with SPDYE1 in more than 1 cancer types. Because this analysis shows association rather than direction, both SPDYE1-to-partner and partner-to-SPDYE1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, ALDOA grouped by SPDYE1-low versus SPDYE1-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SPDYE1→partner) and Y-score (partner→SPDYE1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECALDOA →+0.460+3.459.006.00532
UCECPKN3 →+0.853+2.595<.001<.00132
UCECMFSD12 →+0.411+3.507.008.00232
UCECMON1A →+0.371+3.470.001.00232
UCECCIAO2B →+0.352+2.108.009.00332
UCECDTYMK →+0.498+2.246.002.00532
Each partner links to its Q-omics profile. Showing the 6 strongest of 812 associations by consensus.

ALDOA by SPDYE1 expression — UCEC

Box plot of ALDOA in SPDYE1-low vs SPDYE1-high samples in UCEC.

Explore this box plot interactively →

Exploration