SNX9

Across TCGA patient cohorts, SNX9 protein abundance is significantly associated with the RNA expression of many other genes, with 20,457 significant associations in total. GBM shows the largest number of these associations.

The most reproducible SNX9-associated genes across cancer lineages are LRRC32, VGLL3, and ACTA2. Each is linked with SNX9 in more than 9 cancer types. Because this analysis shows association rather than direction, both SNX9-to-partner and partner-to-SNX9 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SNX9 versus LRRC32 in OV, with a Pearson correlation of 0.39.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SNX9→partner) and Y-score (partner→SNX9) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	LRRC32 →	+1.069	+0.391	<.001	<.001	3	10
UCEC	VGLL3 →	+1.062	+0.479	<.001	<.001	3	10
UCEC	ACTA2 →	+2.060	+0.390	<.001	<.001	3	9
OV	PMP22 →	+0.957	+0.435	<.001	<.001	3	9
COAD	MGP →	+1.346	+0.223	<.001	<.001	3	9
UCEC	LAMA4 →	+1.156	+0.375	<.001	<.001	3	9

Each partner links to its Q-omics profile. Showing the 6 strongest of 20,457 associations by consensus.

SNX9 vs LRRC32 — OV

Explore this scatter interactively →