SNX29

Across TCGA patient cohorts, SNX29 protein abundance is significantly associated with the RNA expression of many other genes, with 14,770 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible SNX29-associated genes across cancer lineages are IFFO1, PIK3CG, and PDE1B. Each is linked with SNX29 in more than 6 cancer types. Because this analysis shows association rather than direction, both SNX29-to-partner and partner-to-SNX29 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SNX29 versus IFFO1 in OV, with a Pearson correlation of 0.48.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SNX29→partner) and Y-score (partner→SNX29) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	IFFO1 →	+1.082	+0.391	<.001	<.001	3	7
OV	PIK3CG →	+0.897	+0.532	<.001	<.001	3	7
OV	PDE1B →	+1.202	+0.672	<.001	<.001	3	7
GBM	GPR65 →	+0.750	+0.198	.001	.001	3	7
GBM	FGD2 →	+1.033	+0.249	<.001	<.001	3	7
BRCA	TMEM86A →	+1.068	+0.222	<.001	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 14,770 associations by consensus.

SNX29 vs IFFO1 — OV

Explore this scatter interactively →