Across TCGA pan-cancer cohorts, SNORD116-23 RNA differs between tumor and matched normal tissue in 2 of 18 cancer types tested, making tumor–normal expression one of SNORD116-23’s most consistent transcriptional readouts.
The strongest signal is observed in thyroid carcinoma (THCA), where SNORD116-23 RNA is repressed in tumor relative to normal tissue. In most cancer types SNORD116-23 is over-expressed in tumor, although a few such as THCA and STAD show the opposite, repressed pattern.
THCA and STAD are the cancer types where SNORD116-23 tumor–normal differential expression is most reproducible.